working on chimeras

[mothur.git] / pintail.h

diff --git a/pintail.h b/pintail.h
index 8afc75469ef4ad8405f2ff54db8293d1cf010e6d..2e841475c79f9382fff32314a3a46577696ddfc3 100644 (file)
--- a/pintail.h
+++ b/pintail.h
@@ -53,7 +53,7 @@ class Pintail : public Chimera {
                vector<Sequence*> querySeqs;
                vector<Sequence*> templateSeqs;
                
-               vector<Sequence> bestfit;  //bestfit[0] matches queryseqs[0]...
+               vector<Sequence*> bestfit;  //bestfit[0] matches queryseqs[0]...
                
                vector< vector<float> > obsDistance;  //obsDistance[0] is the vector of observed distances for queryseqs[0]... 
                vector< vector<float> > expectedDistance;  //expectedDistance[0] is the vector of expected distances for queryseqs[0]... 
@@ -77,9 +77,10 @@ class Pintail : public Chimera {
                
                vector<float> readFreq();
                vector< vector<float> > readQuantiles();
-               vector<Sequence> findPairs(int, int);
+               vector<Sequence*> findPairs(int, int);
                        
                void createProcessesSpots();
+               void createProcessesPairs();
                void createProcesses();
                void createProcessesQuan();