finished chimera changes

[mothur.git] / pintail.cpp

diff --git a/pintail.cpp b/pintail.cpp
index 63a90148699985581c80febe11288a99d5cd87bf..90c97c5e77d50f478aeb1b4bb7b1fa28713ee468 100644 (file)
--- a/pintail.cpp
+++ b/pintail.cpp
@@ -80,8 +80,6 @@ void Pintail::doPrep() {
                bool reRead = false;
                //create filter if needed for later
                if (filter) {
-                       
-cout << "filter" << endl;                      
                                                
                        //read in all query seqs
                        ifstream in; 
@@ -100,10 +98,9 @@ cout << "filter" << endl;
                        //merge query seqs and template seqs
                        temp = templateSeqs;
                        for (int i = 0; i < tempQuerySeqs.size(); i++) {  temp.push_back(tempQuerySeqs[i]);  }
-cout << temp.size() << endl;   
+       
                        if (seqMask != "") {
                            reRead = true;
-       cout << "masked "  << seqMask << endl;
                                //mask templates
                                for (int i = 0; i < temp.size(); i++) {
                                        decalc->runMask(temp[i]);
@@ -111,9 +108,9 @@ cout << temp.size() << endl;
                        }
 
                        mergedFilterString = createFilter(temp, 0.5);
-       cout << "here" << endl;         
+                       
                        //reread template seqs
-                       //for (int i = 0; i < tempQuerySeqs.size(); i++) { delete tempQuerySeqs[i];  }
+                       for (int i = 0; i < tempQuerySeqs.size(); i++) { delete tempQuerySeqs[i];  }
                }