added name parameter to phylotype command

[mothur.git] / phylotypecommand.h

diff --git a/phylotypecommand.h b/phylotypecommand.h
index b61c03939492fe4147225fadb159e00b9a0ef71e..c5aea714714d2f95e5f57ced3fb8289f3039a481 100644 (file)
--- a/phylotypecommand.h
+++ b/phylotypecommand.h
@@ -26,13 +26,16 @@ public:
        
 private:
        bool abort, allLines;
-       string taxonomyFileName, label, outputDir;
+       string taxonomyFileName, label, outputDir, namefile;
        set<string> labels; //holds labels to be used
        int cutoff;
+       map<string, string> namemap;
        
        map<int, int> currentNodes;
        map<int, int> parentNodes;
        map<int, int>::iterator itCurrent;
+       
+       int readNamesFile();
 
 };