some changes while testing 1.9

[mothur.git] / phylotypecommand.cpp

diff --git a/phylotypecommand.cpp b/phylotypecommand.cpp
index 410ada9e4ec921fd8f0ba3ddb5aa362fd0390995..1828eb193c0a6e0dcc625df9cc36ef7fb78f931c 100644 (file)
--- a/phylotypecommand.cpp
+++ b/phylotypecommand.cpp
@@ -119,7 +119,7 @@ int PhylotypeCommand::execute(){
                //reads in taxonomy file and makes all the taxonomies the same length 
                //by appending the last taxon to a given taxonomy as many times as needed to 
                //make it as long as the longest taxonomy in the file 
-               TaxEqualizer* taxEqual = new TaxEqualizer(taxonomyFileName, cutoff);
+               TaxEqualizer* taxEqual = new TaxEqualizer(taxonomyFileName, cutoff, outputDir);
                
                if (m->control_pressed) { delete taxEqual; return 0; }