changes to chop.seqs

[mothur.git] / phylotree.h

diff --git a/phylotree.h b/phylotree.h
index 2f3745074e170210bfc0b8d6b000361b4a410687..a961721a77dad0f32624aa1ff7941651007fc757 100644 (file)
--- a/phylotree.h
+++ b/phylotree.h
@@ -41,13 +41,15 @@ public:
        vector<int> getGenusTotals();   
        void setUp(string);  //used to create file needed for summary file if you use () constructor and add seqs manually instead of passing taxonomyfile
                
-       TaxNode get(int i)                              {       return tree[i];                                                 }
-       TaxNode get(string seqName)             {       return tree[name2Taxonomy[seqName]];    }
-       int getIndex(string seqName)    {       return name2Taxonomy[seqName];                  }
-       string getName(int i)                   {       return tree[i].name;                                    }
+       TaxNode get(int i);                             
+       TaxNode get(string seqName);
+       string getName(int i);                  
+       int getIndex(string seqName);   
+                       
        string getFullTaxonomy(string);  //pass a sequence name return taxonomy
        int getMaxLevel()                               {       return maxLevel;                                                }
        int getNumSeqs()  {  return numSeqs;  }
+       bool ErrorCheck(vector<string>);
        
 private:
        string getNextTaxon(string&);