you can now use a distance matrix as input for the heatmap.sim command.

[mothur.git] / phylotree.h

diff --git a/phylotree.h b/phylotree.h
index f8365d53e7664f9a4ca02cb09dea59cabca11f0b..6e5b58d85c2430807af15e0345a36fece9f0f90e 100644 (file)
--- a/phylotree.h
+++ b/phylotree.h
@@ -35,7 +35,9 @@ public:
        void addSeqToTree(string, string);
        void assignHeirarchyIDs(int);
        void print(ofstream&);
-       vector<int> getGenusNodes();    
+       vector<int> getGenusNodes();
+       void binUnclassified();
+               
        TaxNode get(int i)                              {       return tree[i]; }
        TaxNode get(string seqName)             {       return tree[name2Taxonomy[seqName]];    }
        int getIndex(string seqName)    {       return name2Taxonomy[seqName];  }
@@ -49,6 +51,7 @@ private:
        void print(int, ofstream&);
        int numNodes;
        int numSeqs;
+       int maxLevel;
 };
 
 /**************************************************************************************************/