added debug output classify.seqs. worked on make.contigs command. added large paramet...

[mothur.git] / phylotree.cpp

diff --git a/phylotree.cpp b/phylotree.cpp
index a9ef6cb0d85f44bde915606eb452db993ec40d8d..4ed3d8c1c02e1c5a1ee93b9dd6143309f5606f5c 100644 (file)
--- a/phylotree.cpp
+++ b/phylotree.cpp
@@ -619,13 +619,15 @@ bool PhyloTree::ErrorCheck(vector<string> templateFileNames){
                map<string, int>::iterator itFind;
                map<string, int> taxonomyFileNames = name2Taxonomy;
                
+        if (m->debug) { m->mothurOut("[DEBUG]: in error check. Numseqs in template = " + toString(templateFileNames.size()) + ". Numseqs in taxonomy = " + toString(taxonomyFileNames.size()) + ".\n"); }
+        
                for (int i = 0; i < templateFileNames.size(); i++) {
                        itFind = taxonomyFileNames.find(templateFileNames[i]);
                        
                        if (itFind != taxonomyFileNames.end()) { //found it so erase it
                                taxonomyFileNames.erase(itFind);
                        }else {
-                               m->mothurOut(templateFileNames[i] + " is in your template file and is not in your taxonomy file. Please correct."); m->mothurOutEndLine();
+                               m->mothurOut("'" +templateFileNames[i] + "' is in your template file and is not in your taxonomy file. Please correct."); m->mothurOutEndLine();
                                okay = false;
                        }