class PhyloSummary {
public:
- PhyloSummary(GroupMap*);
- PhyloSummary(string, GroupMap*);
- PhyloSummary(CountTable*);
- PhyloSummary(string, CountTable*);
+ PhyloSummary(GroupMap*, bool);
+ PhyloSummary(string, GroupMap*, bool);
+ PhyloSummary(CountTable*, bool);
+ PhyloSummary(string, CountTable*, bool);
~PhyloSummary() {}
int summarize(string); //pass it a taxonomy file and a group file and it makes the tree
void readTreeStruct(ifstream&);
GroupMap* groupmap;
CountTable* ct;
- bool ignore;
+ bool ignore, relabund;
int numNodes;
int numSeqs;