added summary.tax command and fixed bug with root level totals in tax.summary file

[mothur.git] / phylosummary.h

diff --git a/phylosummary.h b/phylosummary.h
index 04ba65f8ad6c93a5db879a323a2a6b6ed890a3c5..3adcc3f5fb0ed1f31bf0f2c223dff553f487a61a 100644 (file)
--- a/phylosummary.h
+++ b/phylosummary.h
@@ -36,7 +36,7 @@ public:
        PhyloSummary(string, string);
        ~PhyloSummary() { if (groupmap != NULL)  {  delete groupmap;  }  }
        
-       void summarize(string);  //pass it a taxonomy file and a group file and it makes the tree
+       int summarize(string);  //pass it a taxonomy file and a group file and it makes the tree
        int addSeqToTree(string, string);
        int addSeqToTree(string, vector<string>);
        void print(ofstream&);
@@ -55,6 +55,8 @@ private:
        int numSeqs;
        int maxLevel;
        MothurOut* m;
+       
+       void removeConfidences(string&);
 };
 
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