1.22.0

[mothur.git] / phylosummary.cpp

diff --git a/phylosummary.cpp b/phylosummary.cpp
index 47591f6a8ec577afe99fd21b0ab79b989023ce73..b645bac794777a1050de116407fa834370e7940e 100644 (file)
--- a/phylosummary.cpp
+++ b/phylosummary.cpp
@@ -148,7 +148,7 @@ int PhyloSummary::addSeqToTree(string seqName, string seqTaxonomy){
                                        //find out the sequences group
                                        string group = groupmap->getGroup(seqName);
                                        
-                                       if (group == "not found") {  m->mothurOut(seqName + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
+                                       if (group == "not found") {  m->mothurOut("[WARNING]: " + seqName + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
                                        
                                        //do you have a count for this group?
                                        map<string, int>::iterator itGroup = tree[childPointer->second].groupCount.find(group);
@@ -183,7 +183,7 @@ int PhyloSummary::addSeqToTree(string seqName, string seqTaxonomy){
                                                //find out the sequences group
                                                string group = groupmap->getGroup(seqName);
                                                
-                                               if (group == "not found") {  m->mothurOut(seqName + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
+                                               if (group == "not found") {  m->mothurOut("[WARNING]: " + seqName + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
                                                
                                                //do you have a count for this group?
                                                map<string, int>::iterator itGroup = tree[index].groupCount.find(group);
@@ -254,7 +254,7 @@ int PhyloSummary::addSeqToTree(string seqTaxonomy, vector<string> names){
                                                //find out the sequences group
                                                string group = groupmap->getGroup(names[k]);
                                        
-                                               if (group == "not found") {  m->mothurOut(names[k] + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
+                                               if (group == "not found") {  m->mothurOut("[WARNING]: " + names[k] + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
                                                else {
                                                        containsGroup[group] = true;
                                                }
@@ -296,7 +296,7 @@ int PhyloSummary::addSeqToTree(string seqTaxonomy, vector<string> names){
                                                        //find out the sequences group
                                                        string group = groupmap->getGroup(names[k]);
                                                        
-                                                       if (group == "not found") {  m->mothurOut(names[k] + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
+                                                       if (group == "not found") {  m->mothurOut("[WARNING]: " + names[k] + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
                                                        else {
                                                                containsGroup[group] = true;
                                                        }