changed groupfile in classify.seqs to reflect multiple fasta files

[mothur.git] / phylosummary.cpp

diff --git a/phylosummary.cpp b/phylosummary.cpp
index 915a05ff74a14e7fac2a32da119c184ee9908293..5612d7bbf3eded6f86bcdce40c45048ee8edcb25 100644 (file)
--- a/phylosummary.cpp
+++ b/phylosummary.cpp
@@ -114,6 +114,8 @@ int PhyloSummary::addSeqToTree(string seqName, string seqTaxonomy){
                                        //find out the sequences group
                                        string group = groupmap->getGroup(seqName);
                                        
+                                       if (group == "not found") {  m->mothurOut(seqName + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
+                                       
                                        //do you have a count for this group?
                                        map<string, int>::iterator itGroup = tree[currentNode].groupCount.find(group);