private:
GlobalData* globaldata;
-
- int iters, freq;
- bool abort, rarefy;
+
+ float freq;
+ int iters;
+ bool abort, rarefy, summary, collect, scale;
string groups, outputDir;
vector<string> Groups, outputNames; //holds groups to be used, and outputFile names
- void printData(vector<int>&, vector< vector<float> >&, string);
+ void printData(set<int>&, map< string, vector<float> >&, ofstream&, int);
+ void printSumData(map< string, vector<float> >&, ofstream&, int);
+ float calcBranchLength(Tree*, int, map< string, set<int> >&);
};
#endif