added summary, collect, and scale parameters to phylo.diversity command.

[mothur.git] / phylodiversitycommand.h

diff --git a/phylodiversitycommand.h b/phylodiversitycommand.h
index 0aafb8dbc53305a327f7a2b825a2b9c74df8bdb9..76c996c405a92fdb7f5c51d67728c46cf9c902b0 100644 (file)
--- a/phylodiversitycommand.h
+++ b/phylodiversitycommand.h
@@ -27,11 +27,12 @@ class PhyloDiversityCommand : public Command {
                
                float freq;
                int iters;  
-               bool abort, rarefy;
+               bool abort, rarefy, summary, collect, scale;
                string groups, outputDir;
                vector<string> Groups, outputNames; //holds groups to be used, and outputFile names
                
-               void printData(set<int>&, map< string, vector<float> >&, string);
+               void printData(set<int>&, map< string, vector<float> >&, ofstream&, int);
+               void printSumData(map< string, vector<float> >&, ofstream&, int);
                float calcBranchLength(Tree*, int);
 };