fixed trim.seqs bug with qtrim parameter and added num=1 special case to database...

[mothur.git] / pcoacommand.h

diff --git a/pcoacommand.h b/pcoacommand.h
index c62b3d668c9a38287769476a598033544d9790a3..02e562ec23f97d1fdbd0e6e18c949ae3ffc44c54 100644 (file)
--- a/pcoacommand.h
+++ b/pcoacommand.h
@@ -31,15 +31,12 @@ public:
 private:
 
        bool abort, metric;
-       string phylipfile, columnfile, namefile, format, filename, fbase, outputDir;
-       float cutoff, precision;
+       string phylipfile, filename, fbase, outputDir;
        vector<string> outputNames;
        map<string, vector<string> > outputTypes;
        LinearAlgebra linearCalc;
        
        void get_comment(istream&, char, char);
-       int read_phylip(istream&, int, vector<string>&, vector<vector<double> >&);
-       void read(string, vector<string>&, vector<vector<double> >&);
        void recenter(double, vector<vector<double> >, vector<vector<double> >&);
        void output(string, vector<string>, vector<vector<double> >&, vector<double>);