you can now use a distance matrix as input for the heatmap.sim command.

[mothur.git] / pcacommand.h

diff --git a/pcacommand.h b/pcacommand.h
index 822be3b905b1a808e74c8b3b59272ca2431cf763..143e83dda8efbfb2bbd3548e0c02f47920433f26 100644 (file)
--- a/pcacommand.h
+++ b/pcacommand.h
@@ -27,12 +27,11 @@ private:
        bool abort;
        string phylipfile, columnfile, namefile, format, filename, fbase;
        float cutoff, precision;
-       int matrix;
        
        void get_comment(istream&, char, char);
-       void read_mega(istream&, int, vector<string>&, vector<vector<double> >&);
+       void read_mega(istream&, vector<string>&, vector<vector<double> >&);
        void read_phylip(istream&, int, vector<string>&, vector<vector<double> >&);
-       void read(string, int, vector<string>&, vector<vector<double> >&);
+       void read(string, vector<string>&, vector<vector<double> >&);
        double pythag(double, double);
        void matrix_mult(vector<vector<double> >, vector<vector<double> >, vector<vector<double> >&);
        void recenter(double, vector<vector<double> >, vector<vector<double> >&);