added multiple processors option for Windows users to align.seqs, dist.seqs, summary...

[mothur.git] / pcacommand.cpp

diff --git a/pcacommand.cpp b/pcacommand.cpp
index 3a92fa002559fcc7d7f19e1f5f91fe2574f4a3c1..27e448bdfa1060a91c701c25fe301907e3529ec7 100644 (file)
--- a/pcacommand.cpp
+++ b/pcacommand.cpp
@@ -157,7 +157,7 @@ PCACommand::PCACommand(string option)  {
                        groups = validParameter.validFile(parameters, "groups", false);                 
                        if (groups == "not found") { groups = "";  }
                        else { m->splitAtDash(groups, Groups);  }                       
-                       m->Groups = Groups;                     
+                       m->setGroups(Groups);                   
                        
                }
                
@@ -365,7 +365,7 @@ int PCACommand::process(vector<SharedRAbundFloatVector*>& lookupFloat){
                
                string fbase = outputDir + m->getRootName(m->getSimpleName(inputFile));
                string outputFileName = fbase + lookupFloat[0]->getLabel();
-               output(outputFileName, m->Groups, X, d);
+               output(outputFileName, m->getGroups(), X, d);
                
                if (metric) {