minor bugs fixes and added line and label options to read.otu's parselist and shared...

[mothur.git] / parsimonycommand.h

diff --git a/parsimonycommand.h b/parsimonycommand.h
index 5429e77acf8411bd3836e3cc6fa3b1a23db24a5a..e854294834af55cb0cbe97ec035a0e01f78b66a3 100644 (file)
--- a/parsimonycommand.h
+++ b/parsimonycommand.h
@@ -33,10 +33,11 @@ class ParsimonyCommand : public Command {
                GlobalData* globaldata;
                vector<Tree*> T;           //user trees
                Tree* randT;  //random tree
-               TreeMap* tmap;
+               TreeMap* tmap; 
+               TreeMap* savetmap;
                Parsimony* pars;
-               string parsFile, sumFile, distFile;
-               int iters, randomtree, numGroups;
+               string parsFile, sumFile, distFile, randomtree;
+               int iters, numGroups;
                vector<int> numEachGroup; //vector containing the number of sequences in each group the users wants for random distrib.
                vector<float> userTreeScores; //scores for users trees
                vector<float> UScoreSig;  //tree score signifigance when compared to random trees - percentage of random trees with that score or lower.