fixes while testing

[mothur.git] / parsimonycommand.cpp

diff --git a/parsimonycommand.cpp b/parsimonycommand.cpp
index b879395b528b845805c622acd107e637e3af74f8..3d6818b30bac00f2a7137e2f158cb0e415106a9b 100644 (file)
--- a/parsimonycommand.cpp
+++ b/parsimonycommand.cpp
@@ -24,6 +24,7 @@ vector<string> ParsimonyCommand::getValidParameters(){
 //**********************************************************************************************************************
 ParsimonyCommand::ParsimonyCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["parsimony"] = tempOutNames;