sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / parsimony.h

diff --git a/parsimony.h b/parsimony.h
index 7316d508dd52729c8ddec87c34a08c76586cd4d1..bf0e0d4f90198ef353c2c1899414f699454c8a7e 100644 (file)
--- a/parsimony.h
+++ b/parsimony.h
@@ -12,7 +12,7 @@
  */
 
 #include "treecalculator.h"
-#include "treemap.h"
+#include "counttable.h"
 
 /***********************************************************************/
 
@@ -35,8 +35,8 @@ class Parsimony : public TreeCalculator  {
                int processors;
                string outputDir;
        
-               EstOutput driver(Tree*, vector< vector<string> >, int, int, TreeMap*); 
-               EstOutput createProcesses(Tree*, vector< vector<string> >, TreeMap*);
+               EstOutput driver(Tree*, vector< vector<string> >, int, int, CountTable*); 
+               EstOutput createProcesses(Tree*, vector< vector<string> >, CountTable*);
 };
 
 /***********************************************************************/