parsimony command now uses groups, fixed bug with unweighted groups

[mothur.git] / parsimony.h

diff --git a/parsimony.h b/parsimony.h
index b5d7e209c415274020f4d359a35bbcdf374d8383..8955ef7a2253ec5a1f2985d09198431a66a8db2c 100644 (file)
--- a/parsimony.h
+++ b/parsimony.h
@@ -13,6 +13,7 @@
 
 #include "treecalculator.h"
 #include "treemap.h"
+#include "globaldata.hpp"
 
 /***********************************************************************/
 
@@ -24,8 +25,11 @@ class Parsimony : public TreeCalculator  {
                EstOutput getValues(Tree*);
                
        private:
+               GlobalData* globaldata;
                EstOutput data;
                TreeMap* tmap;
+               bool inUsersGroups(string);
+               map<string, int>::iterator it;
 };
 
 /***********************************************************************/