moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / parsimony.h

diff --git a/parsimony.h b/parsimony.h
deleted file mode 100644 (file)
index 7316d50..0000000
--- a/parsimony.h
+++ /dev/null
@@ -1,44 +0,0 @@
-#ifndef PARSIMONY_H
-#define PARSIMONY_H
-
-
-/*
- *  parsimony.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 1/26/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "treecalculator.h"
-#include "treemap.h"
-
-/***********************************************************************/
-
-class Parsimony : public TreeCalculator  {
-       
-       public:
-               Parsimony() {};
-               ~Parsimony() {};
-               EstOutput getValues(Tree*, int, string);
-               
-       private:
-               struct linePair {
-                       int start;
-                       int num;
-                       linePair(int i, int j) : start(i), num(j) {}
-               };
-               vector<linePair> lines;
-       
-               EstOutput data;
-               int processors;
-               string outputDir;
-       
-               EstOutput driver(Tree*, vector< vector<string> >, int, int, TreeMap*); 
-               EstOutput createProcesses(Tree*, vector< vector<string> >, TreeMap*);
-};
-
-/***********************************************************************/
-
-#endif