fixed bug in read.tree updates help and validparameters strings, added ability for...

[mothur.git] / parsimony.cpp

diff --git a/parsimony.cpp b/parsimony.cpp
index 7d08adf8ad3b0a0ad5a25bc98bbf74d1bacda3b9..9a8706e82499fb80f9c2a55d61bc92c7b2399839 100644 (file)
--- a/parsimony.cpp
+++ b/parsimony.cpp
@@ -75,7 +75,9 @@ EstOutput Parsimony::getValues(Tree* t) {
                        if (numGroups == 0) {
                                //get score for all users groups
                                for (int i = 0; i < tmap->namesOfGroups.size(); i++) {
-                                       groups.push_back(tmap->namesOfGroups[i]);
+                                       if (tmap->namesOfGroups[i] != "xxx") {
+                                               groups.push_back(tmap->namesOfGroups[i]);
+                                       }
                                }
                        }else {
                                for (int i = 0; i < globaldata->Groups.size(); i++) {