fixes while testing

[mothur.git] / parsesffcommand.cpp

diff --git a/parsesffcommand.cpp b/parsesffcommand.cpp
index c636ec99221d874ec6b497e2ae3965fd353c8dc0..e2f9d61f5b268644eaf1492e54e91af204439e6f 100644 (file)
--- a/parsesffcommand.cpp
+++ b/parsesffcommand.cpp
@@ -25,6 +25,7 @@ vector<string> ParseSFFCommand::getValidParameters(){
 //**********************************************************************************************************************
 ParseSFFCommand::ParseSFFCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["flow"] = tempOutNames;