moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / parselistscommand.h

diff --git a/parselistscommand.h b/parselistscommand.h
deleted file mode 100644 (file)
index 9356299..0000000
--- a/parselistscommand.h
+++ /dev/null
@@ -1,57 +0,0 @@
-#ifndef PARSELISTCOMMAND_H
-#define PARSELISTCOMMAND_H
-/*
- *  parselistcommand.h
- *  Mothur
- *
- *  Created by westcott on 2/24/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "command.hpp"
-#include "groupmap.h"
-#include "inputdata.h"
-#include "listvector.hpp"
-
-/***************************************************************************************/
-
-class ParseListCommand : public Command {
-       
-public:
-       ParseListCommand(string);
-       ParseListCommand();     
-       ~ParseListCommand() {}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "parse.list";                          }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Parse.list"; }
-       string getDescription()         { return "parses a list file by group"; }
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-private:
-       int parse(ListVector*);
-               
-       ListVector* list;
-       GroupMap* groupMap;
-       InputData* input;
-       
-       ofstream out;
-       string outputDir, listfile, groupfile, label;
-       set<string> labels;
-       bool abort, allLines;
-       vector<string> outputNames;
-       
-       map<string, ofstream*> filehandles;
-       map<string, ofstream*>::iterator it3;
-
-};
-
-/***************************************************************************************/
-
-#endif
-