added smart distance feature and optimized all commands using line by line processing

[mothur.git] / parselistcommand.h

diff --git a/parselistcommand.h b/parselistcommand.h
index 0477acdb06e26ada0f64a25370138a75dc7a06ff..4aa4ccdae8d9235299156bdfbc15b9c47e5b6866 100644 (file)
--- a/parselistcommand.h
+++ b/parselistcommand.h
@@ -43,9 +43,9 @@ private:
        SharedListVector* list;
        map<string, string> listGroups; //maps group name to sequences from that group in a specific OTU
        map<string, string>::iterator it;
-       map<string, SharedListVector*>::iterator it2;
        map<string, ofstream*>::iterator it3;
-       void parse(int);
+       void parse(int, SharedListVector*);
+       void process(SharedListVector*);
        string fileroot;
 };