moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / parsefastaqcommand.h

diff --git a/parsefastaqcommand.h b/parsefastaqcommand.h
deleted file mode 100644 (file)
index 6feabce..0000000
--- a/parsefastaqcommand.h
+++ /dev/null
@@ -1,44 +0,0 @@
-#ifndef PARSEFASTAQCOMMAND_H
-#define PARSEFASTAQCOMMAND_H
-
-/*
- *  parsefastaqcommand.h
- *  Mothur
- *
- *  Created by westcott on 9/30/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-
-class ParseFastaQCommand : public Command {
-
-public:
-       ParseFastaQCommand(string);
-       ParseFastaQCommand();
-       ~ParseFastaQCommand() {}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "parse.fastq";         }
-       string getCommandCategory()             { return "Sequence Processing"; }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Parse.fastq"; }
-       string getDescription()         { return "reads a fastq file and creates a fasta and quality file"; }
-
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }          
-private:
-
-       vector<string> outputNames;     
-       string outputDir, fastaQFile;
-       bool abort, fasta, qual;
-       
-       vector<int> convertQual(string);
-};
-
-#endif
-
-