fixes while testing

[mothur.git] / parsefastaqcommand.cpp

diff --git a/parsefastaqcommand.cpp b/parsefastaqcommand.cpp
index 31de119591dc333cc71ff08305822c018af861be..1e6643162b5962eadaf1cd36cc0ead26700240ec 100644 (file)
--- a/parsefastaqcommand.cpp
+++ b/parsefastaqcommand.cpp
@@ -25,6 +25,7 @@ vector<string> ParseFastaQCommand::getValidParameters(){
 //**********************************************************************************************************************
 ParseFastaQCommand::ParseFastaQCommand(){      
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["fasta"] = tempOutNames;