added out.hierarchy command

[mothur.git] / otuhierarchycommand.h

diff --git a/otuhierarchycommand.h b/otuhierarchycommand.h
new file mode 100644 (file)
index 0000000..39795dc
--- /dev/null
+++ b/otuhierarchycommand.h
@@ -0,0 +1,38 @@
+#ifndef OTUHIERARCHYCOMMAND_H
+#define OTUHIERARCHYCOMMAND_H
+/*
+ *  otuhierarchycommand.h
+ *  Mothur
+ *
+ *  Created by westcott on 1/19/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+#include "listvector.hpp"
+
+//**********************************************************************************************************************
+
+class OtuHierarchyCommand : public Command {
+
+public:
+       OtuHierarchyCommand(string);
+       ~OtuHierarchyCommand();
+       int execute();
+       void help();
+       
+private:
+       bool abort;
+       set<string> labels; //holds labels to be used
+       string label, listFile;
+       
+       vector<ListVector> getListVectors();
+               
+};
+
+//**********************************************************************************************************************
+
+#endif
+
+