added metadata parameter to otu.association

[mothur.git] / otuassociationcommand.h

diff --git a/otuassociationcommand.h b/otuassociationcommand.h
index 7aaa88a61c37a21ec6a9af5d1bb8f0c90066c222..f1d047d97158c966bbeae80985b51c4725648885 100644 (file)
--- a/otuassociationcommand.h
+++ b/otuassociationcommand.h
@@ -33,15 +33,19 @@ public:
        void help() { m->mothurOut(getHelpString()); }  
 private:
        
-       string sharedfile, relabundfile, groups, label, inputFileName, outputDir, method;
+       string sharedfile, relabundfile, metadatafile, groups, label, inputFileName, outputDir, method;
        bool abort, pickedGroups, allLines;
        set<string> labels;
+    vector<SharedRAbundFloatVector*> metadataLookup;
+    vector< vector< double> > metadata;
        
-       vector<string> outputNames, Groups;
+       vector<string> outputNames, Groups, metadataLabels;
        int processShared();
        int process(vector<SharedRAbundVector*>&);
        int processRelabund();
        int process(vector<SharedRAbundFloatVector*>&);
+    int readMetadata();
+    int getMetadata();
        
 };