fixed pvalues for otu.association and corr.axes, fixed bug with pre.cluster added...

[mothur.git] / otuassociationcommand.cpp

diff --git a/otuassociationcommand.cpp b/otuassociationcommand.cpp
index c82510c3d8d0b531d13e4c847d16fe98aa72d611..4b5596441081ce9e2becf9df5d61c4f4636a51e3 100644 (file)
--- a/otuassociationcommand.cpp
+++ b/otuassociationcommand.cpp
@@ -300,7 +300,19 @@ int OTUAssociationCommand::process(vector<SharedRAbundVector*>& lookup){
                        for (int k = 0; k < i; k++) {
                                
                                if (m->control_pressed) { out.close(); return 0; }
-                                                                                               
+                               
+                /*cout << m->binLabelsInFile[i] << " <- c(" << xy[i][0];
+                for (int l = 1; l < xy[i].size(); l++){
+                    cout << ", " << xy[i][l];
+                }
+                cout << ")\n";
+                
+                cout << m->binLabelsInFile[k] << " <- c(" << xy[k][0];
+                for (int l = 1; l < xy[k].size(); l++){
+                    cout << ", " << xy[k][l];
+                }
+                cout << ")\n";*/
+
                                double coef = 0.0;
                                double sig = 0.0;
                                if (method == "spearman")               {   coef = linear.calcSpearman(xy[i], xy[k], sig);      }
@@ -314,6 +326,7 @@ int OTUAssociationCommand::process(vector<SharedRAbundVector*>& lookup){
                
                out.close();
                
+               
                return 0;
                
        }