moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / ordervector.hpp

diff --git a/ordervector.hpp b/ordervector.hpp
deleted file mode 100644 (file)
index 0139a64..0000000
--- a/ordervector.hpp
+++ /dev/null
@@ -1,62 +0,0 @@
-#ifndef ORDER_H
-#define ORDER_H
-
-#include "datavector.hpp"
-#include "sabundvector.hpp"
-#include "rabundvector.hpp"
-
-/* This class is a child to datavector.  It represents OTU information at a certain distance. 
-       A order vector can be converted into and listvector, rabundvector or sabundvector.
-       Each member of the internal container "data" represents the OTU from which it came. 
-       So in the example below since there are 6 sequences in OTU 1 there are six 1's in the ordervector.
-       and since there are 2 sequences in OTU 3 there are two 3's in the ordervector.
-       example: listvector             =       a,b,c,d,e,f             g,h,i           j,k             l               m  
-                        rabundvector   =       6                               3                       2               1               1
-                        sabundvector   =       2               1               1               0               0               1
-                        ordervector    =       1       1       1       1       1       1       2       2       2       3       3       4       5       */
-
-
-class OrderVector : public DataVector {
-       
-public:
-       OrderVector();
-//     OrderVector(int);
-//     OrderVector(const OrderVector& ov);
-       OrderVector(int ns, int nb=0, int mr=0) : DataVector(), data(ns, -1), maxRank(0), numBins(0), numSeqs(0) {};
-       OrderVector(const OrderVector& ov)      : DataVector(ov.label), data(ov.data), maxRank(ov.maxRank), numBins(ov.numBins), numSeqs(ov.numSeqs), needToUpdate(ov.needToUpdate) {if(needToUpdate == 1){     updateStats();}};
-
-
-       OrderVector(string, vector<int>);
-       OrderVector(ifstream&);
-       ~OrderVector(){};
-       
-       void set(int, int);
-       int get(int);
-       void push_back(int);
-       void resize(int);
-       int size();
-       void clear();
-       void print(string, ostream&);
-       vector<int>::iterator begin();
-       vector<int>::iterator end();
-
-       void print(ostream&);
-
-       int getNumBins();
-       int getNumSeqs();
-       int getMaxRank();
-               
-       RAbundVector getRAbundVector();
-       SAbundVector getSAbundVector();
-       OrderVector getOrderVector(map<string,int>*);
-       
-private:
-       vector<int> data;
-       int maxRank;
-       int numBins;
-       int numSeqs;
-       bool needToUpdate;
-       void updateStats();
-};
-
-#endif