merged pat's trim seqs edits with sarah's major overhaul of global data; also added...

[mothur.git] / optionparser.h

diff --git a/optionparser.h b/optionparser.h
index b4d0dcb8691e103aa5c7259f3733d180e93cf29a..dab14debe385472c35f5f405aa8e12b8b1dabcf0 100644 (file)
--- a/optionparser.h
+++ b/optionparser.h
@@ -18,11 +18,12 @@
 /***********************************************************************/
 
 class OptionParser {
-       public:
-               OptionParser() {}
-               ~OptionParser() {}
-               void parse(string, map<string, string>&);  //pass it an option string and a container
-                                                                                         //fills the container key=parameter name, value=parameter value
+public:
+       OptionParser(string);
+       ~OptionParser() {}
+       map<string, string> getParameters();
+private:
+       map<string, string> parameters;
 };
 
 /***********************************************************************/