changes while testing

[mothur.git] / optionparser.h

diff --git a/optionparser.h b/optionparser.h
index 7707e739ce15d7e0dd6657bc08a288222dfbdbb0..044299d43e51442aa673611003c00a80f557deaf 100644 (file)
--- a/optionparser.h
+++ b/optionparser.h
@@ -14,15 +14,17 @@
 
 #include "mothur.h"
 #include "mothurout.h"
-
+#include "command.hpp"
 
 /***********************************************************************/
 
 class OptionParser {
 public:
        OptionParser(string);
+    OptionParser(string, map<string, string>&);
        ~OptionParser() {}
        map<string, string> getParameters();
+       bool getNameFile(vector<string>);
 private:
        map<string, string> parameters;
        MothurOut* m;