broke up globaldata and moved error checking and help into commands

[mothur.git] / optionparser.h

diff --git a/optionparser.h b/optionparser.h
new file mode 100644 (file)
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--- /dev/null
+++ b/optionparser.h
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+#ifndef OPTIONPARSER_H
+#define OPTIONPARSER_H
+
+/*
+ *  optionparser.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 6/8/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+
+
+#include "mothur.h"
+
+
+/***********************************************************************/
+
+class OptionParser {
+       public:
+               OptionParser() {}
+               ~OptionParser() {}
+               void parse(string, map<string, string>&);  //pass it an option string and a container
+                                                                                         //fills the container key=parameter name, value=parameter value
+};
+
+/***********************************************************************/
+
+#endif