fixed subsample name file name issue. added count parameter to cluster command....

[mothur.git] / optionparser.cpp

diff --git a/optionparser.cpp b/optionparser.cpp
index e3850e52c56f629a6e5395203f31cc1299a6193b..a6d5c0a668be5ebdc259a3108d4ff11341f7cd00 100644 (file)
--- a/optionparser.cpp
+++ b/optionparser.cpp
@@ -124,7 +124,7 @@ map<string, string> OptionParser::getParameters() {
                         it->second = m->getTaxonomyFile();
                     }else if (it->first == "biom") {
                         it->second = m->getBiomFile();
-                    }else if (it->first == "counttable") {
+                    }else if (it->first == "count") {
                             it->second = m->getCountTableFile();
                     }else {
                         m->mothurOut("[ERROR]: mothur does not save a current file for " + it->first); m->mothurOutEndLine();