moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / nseqs.h

diff --git a/nseqs.h b/nseqs.h
deleted file mode 100644 (file)
index c0f9549..0000000
--- a/nseqs.h
+++ /dev/null
@@ -1,52 +0,0 @@
-#ifndef NSEQS_H
-#define NSEQS_H
-
-/*
- *  nseqs.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 3/16/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-
-
-#include "calculator.h"
-
-/***********************************************************************/
-
-class NSeqs : public Calculator {
-
-public:
-       NSeqs() : Calculator("nseqs", 1, false) {};
-       EstOutput getValues(SAbundVector* rank){
-               data.resize(1,0);
-               data[0] = (double)rank->getNumSeqs();
-               return data;
-       }
-       
-       EstOutput getValues(vector<SharedRAbundVector*> shared) { //return number of sequences in the sharedotus
-               
-               int numGroups = shared.size();
-               data.clear(); data.resize(numGroups,0);
-
-               for (int i = 0; i < shared[0]->getNumBins(); i++) {
-                       //get bin values and set sharedByAll 
-                       bool sharedByAll = true;
-                       for (int j = 0; j < numGroups; j++) {
-                               if (shared[j]->getAbundance(i) == 0) { sharedByAll = false; }
-                       }
-                       
-                       //they are shared
-                       if (sharedByAll == true) {  for (int j = 0; j < numGroups; j++) {  data[j] += shared[j]->getAbundance(i);  } }
-               }
-
-               return data;
-       }
-       string getCitation() { return "http://www.mothur.org/wiki/Nseqs"; }
-};
-
-/***********************************************************************/
-
-#endif