adding labels to list file.

[mothur.git] / normalizesharedcommand.cpp

diff --git a/normalizesharedcommand.cpp b/normalizesharedcommand.cpp
index acd8208ea7ebb20a3d3810d254d0b24f5386d4d3..1000e4243e0c6fbf15f5e384871131f74d2a4ea5 100644 (file)
--- a/normalizesharedcommand.cpp
+++ b/normalizesharedcommand.cpp
@@ -458,7 +458,7 @@ int NormalizeSharedCommand::execute(){
 int NormalizeSharedCommand::normalize(vector<SharedRAbundVector*>& thisLookUp){
        try {
                //save mothurOut's binLabels to restore for next label
-               vector<string> saveBinLabels = m->currentBinLabels;
+               vector<string> saveBinLabels = m->currentSharedBinLabels;
                
                if (pickedGroups) { eliminateZeroOTUS(thisLookUp); }
                
@@ -540,7 +540,7 @@ int NormalizeSharedCommand::normalize(vector<SharedRAbundVector*>& thisLookUp){
                
                out.close();
                
-               m->currentBinLabels = saveBinLabels;
+               m->currentSharedBinLabels = saveBinLabels;
                
                return 0;
        }
@@ -555,7 +555,7 @@ int NormalizeSharedCommand::normalize(vector<SharedRAbundFloatVector*>& thisLook
        try {
                
                //save mothurOut's binLabels to restore for next label
-               vector<string> saveBinLabels = m->currentBinLabels;
+               vector<string> saveBinLabels = m->currentSharedBinLabels;
                
         map<string, string> variables; 
         variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(inputfile));
@@ -629,7 +629,7 @@ int NormalizeSharedCommand::normalize(vector<SharedRAbundFloatVector*>& thisLook
                
                out.close();
                
-               m->currentBinLabels = saveBinLabels;
+               m->currentSharedBinLabels = saveBinLabels;
                
                return 0;
        }
@@ -675,7 +675,7 @@ int NormalizeSharedCommand::eliminateZeroOTUS(vector<SharedRAbundVector*>& thisl
                                        for (int h = 0; h < diff; h++) { binLabel += "0"; }
                                }
                                binLabel += sbinNumber; 
-                               if (i < m->currentBinLabels.size()) {  binLabel = m->currentBinLabels[i]; }
+                               if (i < m->currentSharedBinLabels.size()) {  binLabel = m->currentSharedBinLabels[i]; }
                                
                                newBinLabels.push_back(binLabel);
                        }
@@ -684,7 +684,7 @@ int NormalizeSharedCommand::eliminateZeroOTUS(vector<SharedRAbundVector*>& thisl
                for (int j = 0; j < thislookup.size(); j++) {  delete thislookup[j];  }
 
                thislookup = newLookup;
-               m->currentBinLabels = newBinLabels;
+               m->currentSharedBinLabels = newBinLabels;
                
                return 0;
  
@@ -731,7 +731,7 @@ int NormalizeSharedCommand::eliminateZeroOTUS(vector<SharedRAbundFloatVector*>&
                                        for (int h = 0; h < diff; h++) { binLabel += "0"; }
                                }
                                binLabel += sbinNumber; 
-                               if (i < m->currentBinLabels.size()) {  binLabel = m->currentBinLabels[i]; }
+                               if (i < m->currentSharedBinLabels.size()) {  binLabel = m->currentSharedBinLabels[i]; }
                                
                                newBinLabels.push_back(binLabel);
                        }
@@ -740,7 +740,7 @@ int NormalizeSharedCommand::eliminateZeroOTUS(vector<SharedRAbundFloatVector*>&
                for (int j = 0; j < thislookup.size(); j++) {  delete thislookup[j];  }
                
                thislookup = newLookup;
-               m->currentBinLabels = newBinLabels;
+               m->currentSharedBinLabels = newBinLabels;
                
                return 0;