m->mothurOut("Normalizing to " + toString(norm) + "."); m->mothurOutEndLine();
}
+
//as long as you are not at the end of the file or done wih the lines you want
while((lookup[0] != NULL) && ((allLines == 1) || (userLabels.size() != 0))) {
if(allLines == 1 || labels.count(lookup[0]->getLabel()) == 1){
m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine();
+ if (!m->printedHeaders) { lookup[0]->printHeaders(out); }
normalize(lookup, out);
processedLabels.insert(lookup[0]->getLabel());
for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; }
lookup = input->getSharedRAbundVectors(lastLabel);
m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine();
-
+ if (!m->printedHeaders) { lookup[0]->printHeaders(out); }
normalize(lookup, out);
processedLabels.insert(lookup[0]->getLabel());
lookup = input->getSharedRAbundVectors(lastLabel);
m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine();
-
+ if (!m->printedHeaders) { lookup[0]->printHeaders(out); }
normalize(lookup, out);
for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; }
if(allLines == 1 || labels.count(lookupFloat[0]->getLabel()) == 1){
m->mothurOut(lookupFloat[0]->getLabel()); m->mothurOutEndLine();
+
+ if (!m->printedHeaders) { lookupFloat[0]->printHeaders(out); }
normalize(lookupFloat, out);
processedLabels.insert(lookupFloat[0]->getLabel());
for (int i = 0; i < lookupFloat.size(); i++) { delete lookupFloat[i]; }
lookupFloat = input->getSharedRAbundFloatVectors(lastLabel);
- m->mothurOut(lookupFloat[0]->getLabel()); m->mothurOutEndLine();
+ m->mothurOut(lookupFloat[0]->getLabel()); m->mothurOutEndLine();
+ if (!m->printedHeaders) { lookupFloat[0]->printHeaders(out); }
normalize(lookupFloat, out);
processedLabels.insert(lookupFloat[0]->getLabel());
m->mothurOut(lookupFloat[0]->getLabel()); m->mothurOutEndLine();
+ if (!m->printedHeaders) { lookupFloat[0]->printHeaders(out); }
normalize(lookupFloat, out);
for (int i = 0; i < lookupFloat.size(); i++) { delete lookupFloat[i]; }