sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / nocommands.h

diff --git a/nocommands.h b/nocommands.h
index f11673f98ce4e7c5c01f8c2aa624e85911f01fc7..8c1d7222964a40de5cd06835260c2a5323238584 100644 (file)
--- a/nocommands.h
+++ b/nocommands.h
@@ -19,17 +19,23 @@ class NoCommand : public Command {
 public:
        NoCommand(string);
        NoCommand() {}
-       ~NoCommand();
-       vector<string> getRequiredParameters();
-       vector<string> getValidParameters();
-       vector<string> getRequiredFiles();
-       map<string, vector<string> > getOutputFiles() { return outputTypes; }
-       int execute();
-       void help() {}
+       ~NoCommand(){}
+       
+       vector<string> setParameters()      { return outputNames;       } //dummy, doesn't really do anything   
+       string getCommandName()             { return "NoCommand";       }
+       string getCommandCategory()         { return "Hidden";          }
+       string getHelpString()              { return "No Command";      }       
+    string getOutputPattern(string) { return "";                }
+       string getCitation()                { return "no citation";     }
+       string getDescription()             { return "no description";  }
+
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
        
 private:
        vector<string> outputNames;
-       map<string, vector<string> > outputTypes;
                
 };