added modify names parameter to set.dir

[mothur.git] / nmdscommand.h

diff --git a/nmdscommand.h b/nmdscommand.h
index 0b7f5a8264c18b88ca0a271089e818cd85bfd86b..92b694864a6d15f5b5dc20f176a271a7506ae6eb 100644 (file)
--- a/nmdscommand.h
+++ b/nmdscommand.h
@@ -37,9 +37,12 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "nmds";                                        }
        string getCommandCategory()             { return "Hypothesis Testing";          }
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "Borg, Groenen (1997). Non-metric multidimensional scaling function using the majorization algorithm, in Modern Multidimensional Scaling. Ed. T.F. Cox and M.A.A. Cox. Chapman and Hall. \nhttp://www.mothur.org/wiki/Nmds"; }
-       
+       string getDescription()         { return "nmds"; }
+
        int execute();
        void help() { m->mothurOut(getHelpString()); }