added countable class to read and store count file. added count parameter to make...

[mothur.git] / nmdscommand.h

diff --git a/nmdscommand.h b/nmdscommand.h
index f099f95a4c0baadc0d50747cac5cd18e6972439f..90364adcdc03198320a12c86fc0ef4b7f970c650 100644 (file)
--- a/nmdscommand.h
+++ b/nmdscommand.h
@@ -37,9 +37,11 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "nmds";                                        }
        string getCommandCategory()             { return "Hypothesis Testing";          }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
-       string getCitation() { return "Non-metric multidimensional scaling function using the majorization algorithm from Borg & Groenen 1997, Modern Multidimensional Scaling. http://www.mothur.org/wiki/Nmds"; }
-       
+       string getCitation() { return "Borg, Groenen (1997). Non-metric multidimensional scaling function using the majorization algorithm, in Modern Multidimensional Scaling. Ed. T.F. Cox and M.A.A. Cox. Chapman and Hall. \nhttp://www.mothur.org/wiki/Nmds"; }
+       string getDescription()         { return "nmds"; }
+
        int execute();
        void help() { m->mothurOut(getHelpString()); }