added load.logfile command. changed summary.single output for subsample=t.

[mothur.git] / newcommandtemplate.cpp

diff --git a/newcommandtemplate.cpp b/newcommandtemplate.cpp
index 92992061f29e2d01a65eb09445e6827caef2624f..085039eb1b9c3313acb5541744c5484abf49312a 100644 (file)
--- a/newcommandtemplate.cpp
+++ b/newcommandtemplate.cpp
@@ -64,6 +64,28 @@ string NewCommand::getHelpString(){
        }
 }
 //**********************************************************************************************************************
+string NewCommand::getOutputFileNameTag(string type, string inputName=""){     
+       try {
+        string tag = "";
+               map<string, vector<string> >::iterator it;
+        
+        //is this a type this command creates
+        it = outputTypes.find(type);
+        if (it == outputTypes.end()) {  m->mothurOut("[ERROR]: this command doesn't create a " + type + " output file.\n"); }
+        else {
+            if (type == "fileType1") {  tag = "tag1"; }
+            else if (type == "fileType2") {  tag = "tag2"; }
+            else if (type == "fileType3") {  tag = "tag3"; }
+            else { m->mothurOut("[ERROR]: No definition for type " + type + " output file tag.\n"); m->control_pressed = true;  }
+        }
+        return tag;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "NewCommand", "getOutputFileName");
+               exit(1);
+       }
+}
+//**********************************************************************************************************************
 NewCommand::NewCommand(){      
        try {
                abort = true; calledHelp = true;
@@ -71,7 +93,7 @@ NewCommand::NewCommand(){
         vector<string> tempOutNames;
                outputTypes["fileType1"] = tempOutNames; //filetypes should be things like: shared, fasta, accnos...
                outputTypes["fileType2"] = tempOutNames;
-               outputTypes["FileType2"] = tempOutNames;
+               outputTypes["FileType3"] = tempOutNames;
        }
        catch(exception& e) {
                m->errorOut(e, "NewCommand", "NewCommand");