moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / nastreport.hpp

diff --git a/nastreport.hpp b/nastreport.hpp
deleted file mode 100644 (file)
index c25575a..0000000
--- a/nastreport.hpp
+++ /dev/null
@@ -1,55 +0,0 @@
-#ifndef NASTREPORT_HPP
-#define NASTREPORT_HPP
-
-
-/*
- *  nastreport.hpp
- *  
- *
- *  Created by Pat Schloss on 12/19/08.
- *  Copyright 2008 Patrick D. Schloss. All rights reserved.
- *
- */
-
-#include "mothur.h"
-
-/******************************************************************************************************************/
-
-class NastReport {
-
-public:
-       NastReport(string);
-       NastReport();
-       ~NastReport();
-       void setCandidate(Sequence*);
-       void setTemplate(Sequence*);
-       void setSearchParameters(string, float);
-       void setAlignmentParameters(string, Alignment*);
-       void setNastParameters(Nast);
-       void print();
-       string getReport();
-       string getHeaders();
-       
-private:
-       string queryName;
-       string output;
-       int queryLength;
-       string templateName;
-       int templateLength;
-       string searchMethod;
-       float searchScore;
-       string alignmentMethod;
-       int candidateStartPosition, candidateEndPosition;
-       int templateStartPosition, templateEndPosition;
-
-       int pairwiseAlignmentLength;
-       int longestInsert;
-       int totalGapsInQuery, totalGapsInTemplate;
-       float similarityToTemplate;
-       ofstream candidateReportFile;
-       MothurOut* m;
-};
-
-/******************************************************************************************************************/
-
-#endif