addition of summary.seq command [pds]

[mothur.git] / nastreport.cpp

diff --git a/nastreport.cpp b/nastreport.cpp
index 67ec702fdd122b732b0f7e0598fe54f791a121c8..799793ece4dda8567d1dcb5a9865a70c9dd45f3e 100644 (file)
--- a/nastreport.cpp
+++ b/nastreport.cpp
@@ -48,14 +48,14 @@ void NastReport::print(){
 
 void NastReport::setCandidate(Sequence* candSeq){ 
        queryName = candSeq->getName();
-       queryLength = candSeq->getUnalignLength();
+       queryLength = candSeq->getNumBases();
 }
 
 /******************************************************************************************************************/
 
 void NastReport::setTemplate(Sequence* tempSeq){ 
        templateName = tempSeq->getName();
-       templateLength = tempSeq->getUnalignLength();
+       templateLength = tempSeq->getNumBases();
 }
 
 /******************************************************************************************************************/