fixed bug with aligner and longest base. added deunique.seqs command.

[mothur.git] / nast.cpp

diff --git a/nast.cpp b/nast.cpp
index b2887523532c6b6bcaef1ca61b2c748a9ad77d14..28cc659e9c5a6090bcd6cb5edecdc7cf9d6c9ec0 100644 (file)
--- a/nast.cpp
+++ b/nast.cpp
@@ -25,8 +25,10 @@ Nast::Nast(Alignment* method, Sequence* cand, Sequence* temp) : alignment(method
        try {
                m = MothurOut::getInstance();
                maxInsertLength = 0;
+       
                pairwiseAlignSeqs();    //      This is part A in Fig. 2 of DeSantis et al.
                regapSequences();               //      This is parts B-F in Fig. 2 of DeSantis et al.
+               
        }
        catch(exception& e) {
                m->errorOut(e, "Nast", "Nast");