working on chimeras

[mothur.git] / nast.cpp

diff --git a/nast.cpp b/nast.cpp
index 6a4ae3db2f679ee4ccadf2b0ff3270f5da4f15aa..c91c9fab537172b3e02808b700af881affffc368 100644 (file)
--- a/nast.cpp
+++ b/nast.cpp
@@ -26,7 +26,6 @@ Nast::Nast(Alignment* method, Sequence* cand, Sequence* temp) : alignment(method
                maxInsertLength = 0;
                pairwiseAlignSeqs();    //      This is part A in Fig. 2 of DeSantis et al.
                regapSequences();               //      This is parts B-F in Fig. 2 of DeSantis et al.
-
        }
        catch(exception& e) {
                errorOut(e, "Nast", "Nast");
@@ -41,7 +40,7 @@ void Nast::pairwiseAlignSeqs(){       //      Here we call one of the pairwise alignment me
        try {
 
                alignment->align(candidateSeq->getUnaligned(), templateSeq->getUnaligned());
-       
+
                string candAln = alignment->getSeqAAln();
                string tempAln = alignment->getSeqBAln();