indicator command

[mothur.git] / myutils.cpp

diff --git a/myutils.cpp b/myutils.cpp
index b9c01470f75a9f26baae58a174765fc154ce20d3..d0d3817b631e7f0e0f4a48ec349ccabd6cdd8894 100755 (executable)
--- a/myutils.cpp
+++ b/myutils.cpp
@@ -1531,6 +1531,7 @@ static void GetArgsFromFile(const string &FileName, vector<string> &Args)
 \r
 void MyCmdLine(int argc, char **argv)\r
        {\r
+       g_Opts.clear();\r
        static unsigned RecurseDepth = 0;\r
        ++RecurseDepth;\r
 \r