added save parameter to align.seqs, chimera commands, classify.seqs, and seq.error...

[mothur.git] / myutils.cpp

diff --git a/myutils.cpp b/myutils.cpp
index d0d3817b631e7f0e0f4a48ec349ccabd6cdd8894..786316e13434c07f9844cb55be24e12dae84b292 100755 (executable)
--- a/myutils.cpp
+++ b/myutils.cpp
@@ -954,7 +954,7 @@ void ProgressExit()
 // Skip exit(), which can be very slow in DEBUG build\r
 // VERY DANGEROUS practice, because it skips global destructors.\r
 // But if you know the rules, you can break 'em, right?\r
-       ExitProcess(0);\r
+       //ExitProcess(0);\r
 #endif\r
        }\r
 \r
@@ -1531,7 +1531,7 @@ static void GetArgsFromFile(const string &FileName, vector<string> &Args)
 \r
 void MyCmdLine(int argc, char **argv)\r
        {\r
-       g_Opts.clear();\r
+       g_Opts.clear(); g_Argv.clear();\r
        static unsigned RecurseDepth = 0;\r
        ++RecurseDepth;\r
 \r