moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / myseqdist.h

diff --git a/myseqdist.h b/myseqdist.h
deleted file mode 100644 (file)
index 74c9ea7..0000000
--- a/myseqdist.h
+++ /dev/null
@@ -1,53 +0,0 @@
-#ifndef CORRECTDIST_H
-#define CORRECTDIST_H
-
-
-/*
- *  pds.seqdist.h
- *  
- *
- *  Created by Pat Schloss on 8/12/11.
- *  Copyright 2011 Patrick D. Schloss. All rights reserved.
- *
- */
-
-#include "mothurout.h"
-
-/**************************************************************************************************/
-
-class correctDist {
-public:
-       correctDist(string, int);
-       correctDist(int);
-       ~correctDist(){}
-       
-       int addSeq(string, string);
-       int execute(string);
-       
-private:
-       MothurOut* m;
-       int getSequences(string);
-       vector<int> fixSequence(string);
-       
-       int driver(int, int, string);
-       int createProcess(string);
-       
-       double getDist(vector<int>&, vector<int>&);
-       int getLastMatch(char, vector<vector<char> >&, int, int, vector<int>&, vector<int>&);
-       
-       vector<vector<double> > correctMatrix;
-       
-       vector<vector<int> > sequences;
-       
-       vector<string> names;   
-       int numSeqs;
-       int processors;
-       vector<int> start;
-       vector<int> end;
-};
-
-/**************************************************************************************************/
-
-#endif
-
-