vector<string> binLabelsInFile;
vector<string> currentBinLabels;
string saveNextLabel, argv, sharedHeaderMode, groupMode;
- bool printedHeaders, commandInputsConvertError, changedSeqNames;
+ bool printedHeaders, commandInputsConvertError, changedSeqNames, modifyNames;
//functions from mothur.h
//file operations
vector<double> getStandardDeviation(vector< vector<double> >&);
vector<double> getStandardDeviation(vector< vector<double> >&, vector<double>&);
vector<double> getAverages(vector< vector<double> >&);
+ double getAverage(vector<double>);
vector< vector<seqDist> > getStandardDeviation(vector< vector< vector<seqDist> > >&);
vector< vector<seqDist> > getStandardDeviation(vector< vector< vector<seqDist> > >&, vector< vector<seqDist> >&);
vector< vector<seqDist> > getAverages(vector< vector< vector<seqDist> > >&, string);
sharedHeaderMode = "";
groupMode = "group";
changedSeqNames = false;
+ modifyNames = true;
}
~MothurOut();